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Billing & Payments Guide

Billing is how you track money owed, process payments, and manage your clinic’s finances. This guide walks you through creating charges, invoicing patients, and receiving payments.

Core Concepts

Charge - A bill for services or products provided to a patient Cart - A draft collection of charges before converting to an invoice Invoice - A formal bill sent to patient Payment - Money received from patient toward their charges Credit - Prepaid balance available for future charges

Getting Started

Access billing by clicking Billing from the main menu.

The Billing Dashboard

Your dashboard shows:
  • Total Revenue - All money received this period
  • Outstanding Balance - Money patients still owe
  • Pending Invoices - Unpaid bills sent to patients
  • Recent Transactions - Latest charges and payments
  • Aging Report - How long invoices have been unpaid

Creating Charges

Charges are created from services provided to patients.

Automatic Charges

When you complete an appointment, charges auto-create based on:
  • Service type and rate
  • Duration of appointment
  • Any add-ons or extras

Manual Charges

Create charges directly:
  1. Go to Billing > Charges
  2. Click Create Charge
  3. Select patient
  4. Add line items:
    • Service name
    • Quantity
    • Unit price
  5. Review subtotal
  6. Click Save
The charge now appears in your system and patient’s balance.

Using Carts (Quotes & Drafts)

A cart is a temporary collection of items before creating an invoice. Use carts to:
  • Show patients a quote before they commit
  • Collect multiple items before invoicing
  • Get approval before charging

Creating a Cart

  1. Go to Billing > Carts
  2. Click New Cart
  3. Select patient
  4. Add items:
    • Services and products
    • Packages or memberships
    • Discounts or promotions
  5. Set due date
  6. Click Save

Converting Cart to Invoice

  1. Open cart
  2. Click Create Invoice
  3. Review details
  4. Choose delivery method:
    • Email to patient
    • In-person (print)
    • SMS link
  5. Click Send

Sharing a Quote with Patient

Before converting to invoice:
  1. Open cart
  2. Click Share Quote
  3. Patient receives link via email
  4. They can review and approve
  5. You can track if they viewed it

Processing Payments

When patient pays, record the payment immediately.

Methods of Payment

Credit/Debit Card
  • Customer pays directly using card terminal or online form
  • Automatic authorization and settlement
  • Receipt generated immediately
Cash
  • Received in person at clinic
  • Record manually in system
  • Include bill count for cash reconciliation
Check
  • Received from patient
  • Record in system
  • Note check number and bank details
Bank Transfer / ACH
  • Patient sends directly to clinic bank
  • Match payment to patient in system
  • Process takes 1-3 business days
Patient Credit
  • Deduct from prepaid credits
  • Useful for package or membership holders

Recording a Payment

  1. Go to Billing > Payments
  2. Click Record Payment
  3. Select patient
  4. Enter amount
  5. Select payment method
  6. Add optional notes
  7. Click Save
Payment is applied to oldest unpaid invoices first (by default).

Processing Card Payments

For credit/debit cards processed through Decoda:
  1. Patient is in clinic
  2. Click Check Out on their appointment
  3. Display total owed
  4. Patient swipes/taps card
  5. Get authorization
  6. Receipt prints automatically
  7. Payment records immediately

Invoices & Statements

Creating an Invoice

Invoices are formal bills with payment terms and due dates.
  1. Go to Billing > Invoices
  2. Click Create Invoice
  3. Select patient
  4. Add charges/items
  5. Set payment terms (Net 15, Net 30, etc.)
  6. Set due date
  7. Click Send
Patient receives invoice via email with payment link.

Invoice Reminder

If invoice unpaid past due date:
  1. Go to Invoices
  2. Click Send Reminder
  3. Patient receives email notice
  4. Include payment link

Patient Statements

Monthly statement shows all charges, payments, and balance:
  1. Go to Billing > Statements
  2. Select patient
  3. Choose date range
  4. Click Generate Statement
  5. Email or print for patient

Payment Plans

Break large charges into manageable installments.

Creating a Payment Plan

  1. Open patient’s invoice or charge
  2. Click Create Payment Plan
  3. Enter:
    • Total amount
    • Number of payments
    • Start date
  4. System calculates installments
  5. Click Create
Patient sees:
  • Due date for each payment
  • Amount due each period
  • Payment links

Automatic Recurring Payments

With recurring enabled:
  • Card automatically charged on due dates
  • Failures retry after 3 days
  • Patient notified of any issues
  • Update stored card anytime

Managing Patient Credits

Credits are prepaid amounts applied to future charges.

Adding Credit

  1. Go to Billing > Deposits
  2. Click Add Deposit
  3. Select patient
  4. Enter amount received
  5. Note payment method
  6. Click Save
Credit now available on patient’s account.

Using Credits

Credits auto-apply to new invoices or:
  1. Open patient’s account
  2. Click Apply Credit
  3. Select which invoice(s) to apply toward
  4. Confirm

Refunding Credits

If patient requests refund:
  1. Go to Refunds
  2. Click Create Refund
  3. Select payment to refund
  4. Enter amount
  5. Choose refund method (card, check, deposit)
  6. Click Process

Advanced Billing

Discounts

Apply discounts to charges:
  • Percentage discount (10% off)
  • Fixed amount ($50 off)
  • Write-offs (patient can’t pay)
  1. Open invoice or charge
  2. Click Add Discount
  3. Select type and amount
  4. Save

Refunds

Reverse charges already paid:
  1. Go to Billing > Refunds
  2. Click Create Refund
  3. Select original payment
  4. Enter refund amount
  5. Choose refund method
  6. Process

Adjustments

Modify charges after creation:
  1. Go to Billing > Adjustments
  2. Click New Adjustment
  3. Select invoice to adjust
  4. Change amounts or remove items
  5. Note reason
  6. Save

Commission Tracking

If paying providers/staff commissions:
  1. Go to Billing > Commissions
  2. View provider commissions for period
  3. Commission calculated on services they provided
  4. Pay via deposit or manual payment

Advanced Billing Scenarios

Beyond standard recurring installments:
  • Graduated payments - Payments increase/decrease over time
  • Conditional payments - Payment triggered by event (appointment completion, etc.)
  • Skipped payments - Skip payment month (e.g., August vacation)
  • Custom payment dates - Non-uniform payment schedule
  • Payment holidays - Pause plan temporarily without affecting schedule
Example: Pay 100month1,100 month 1, 150 month 2, $200 month 3 for treatment plan
Manage complex tax scenarios:
  • Tax by location - Different tax rates per clinic location
  • Tax by service type - Some services taxed, others exempt
  • Compound tax - Multiple tax types applied sequentially
  • Tax holidays - Temporary exemptions or rate changes
  • Services always exempt - Medical services exempt from tax
  • Digital vs physical - Different tax for products vs. services
Example: Medical consultations tax-exempt, but skincare products taxed at 8%
Detailed commission structure:
  • Percentage commissions - X% of revenue from services they provide
  • Tiered commissions - Higher % as they hit revenue targets
  • Flat rate per service - Fixed amount per appointment
  • Gross vs net commissions - After expenses vs. on gross revenue
  • Commission caps - Maximum commission per period
  • Service-specific rates - Different % for different services
  • Splits between providers - Shared commission (e.g., 60/40 split)
Example: Dr. Smith gets 40% on procedures, 20% on consultations, 50% if monthly revenue >$10K
If handling insurance payments:
  • Insurance verification - Verify coverage before appointment
  • Insurance claims - Automatic claim submission
  • Coordination of benefits - Multiple insurance handling
  • Denial management - Track and resubmit denied claims
  • Insurance aging reports - Track uncollected insurance claims
  • Patient responsibility - Calculate copay/deductible/coinsurance
Requires: Insurance integration setup
If serving international patients:
  • Currency selection - Patient pays in their currency
  • Exchange rates - Real-time or manual rate setting
  • International payment processors - Handling foreign cards
  • Currency conversion fees - Track processor fees
  • Reporting by currency - Separate tracking per currency
Example: US patient charged in USD, Canadian patient in CAD
Handling payment issues:
  • Refund policies - Set automatic refund eligibility
  • Chargeback handling - Process customer disputes
  • Reversal timing - Auto-reversal of failed payments
  • Refund reasons tracking - Document why refunded
  • Partial refunds - Refund portion of charge
  • Store credit alternative - Offer credit instead of refund
Best practice: Document reason for all refunds for accounting
Advanced financial operations:
  • General ledger integration - Export to accounting software
  • Accrual vs cash accounting - Revenue recognition methods
  • Audit trails - Complete transaction history
  • Void vs refund - Accounting difference
  • Bank reconciliation - Match deposits to bank statements
  • Tax reporting export - Generate tax reports (1099, etc.)
For: Accountants and bookkeepers
Managing uncollectable amounts:
  • Aging analysis - Track invoice aging automatically
  • Auto-write-off - Automatically write off at X days/amount
  • Collections outreach - Track collection attempts
  • Payment arrangements - Set up payment plans with overdue accounts
  • Collections agency - Flag for external collection
  • Bad debt expense - Track and reserve for uncollectable
Important: Document collection attempts for legal reasons

Reconciliation

Balance your records with actual money received.

Daily Cash Reconciliation

  1. Go to Billing > Cash Balances
  2. Enter cash counted
  3. System shows recorded cash payments
  4. Click Reconcile
  5. Note any discrepancies

Monthly Reconciliation

  1. Go to Billing > Statements
  2. Generate statement for period
  3. Compare to bank deposits
  4. Note any unmatched items

Reports & Analytics

Revenue Dashboard

View financial performance:
  • Revenue by Service - Which services generate most income
  • Revenue by Provider - Performance by staff member
  • Daily Revenue - Trends over time
  • Outstanding Aging - Invoice aging analysis

Payment Methods Report

See breakdown of how patients pay:
  • Credit card vs cash vs check
  • Identify payment trends
  • Plan for payment processing

Charge & Payment History

View complete transaction history for:
  • Individual patient
  • Date range
  • Payment status
  • All adjustments and refunds

Billing Settings

Configure billing behavior in Settings > Payment Management: Default Rates
  • Standard rates for services
  • Override per appointment if needed
Payment Terms
  • Default due date (Net 15, Net 30, etc.)
  • Grace period before late notice
Auto-Charges
  • Services auto-bill on completion
  • Memberships auto-renew per schedule
  • Payment plans auto-charge on schedule
Email Templates
  • Customize invoice email
  • Customize payment reminder
  • Customize receipt

Payment Processors

Rainforest Payments (Primary)

Default credit card processor:
  • Accepts all major cards
  • Real-time authorization
  • Automatic settlement
  • PCI compliant

Multiple Payment Methods

Configure which methods patients can use:
  • Credit/debit cards
  • ACH bank transfers
  • Checks
  • Patient credit

Best Practices

Invoice Promptly

  • Create invoices same day service provided
  • Send immediately to avoid delays
  • Include payment link

Follow Up on Past Due

  • First reminder at 15 days past due
  • Second reminder at 30 days
  • Consider collection at 60+ days
  • Write off uncollectible at 90+ days

Reconcile Weekly

  • Match payments to invoices
  • Clear discrepancies quickly
  • Maintain accurate records

Monitor Aging

  • Review outstanding invoices weekly
  • Identify slow payers early
  • Adjust credit terms if needed

Use Payment Plans

  • Offer plans for larger amounts
  • Improve payment collection
  • Reduce patient stress

Common Tasks

Applying Payment to Wrong Invoice

  1. Go to Billing > Payments
  2. Find the payment
  3. Click Reallocate
  4. Select correct invoice
  5. Save

Splitting a Charge Among Providers

  1. Open charge
  2. Click Allocate Commission
  3. Enter percentage for each provider
  4. Commission calculated accordingly

Creating Bulk Invoices

  1. Go to Invoices
  2. Click Bulk Create
  3. Upload CSV with patient IDs and amounts
  4. System creates invoices
  5. Automatically sends to patients

Troubleshooting

“Payment declined”
  • Check card details
  • Verify not expired
  • Try different payment method
  • Contact card issuer
“Patient can’t see invoice”
  • Check email was sent
  • Verify patient email address
  • Resend invoice link
  • Check spam folder
“Balance doesn’t match”
  • Run reconciliation report
  • Check for pending credits
  • Verify all adjustments recorded
  • Contact support if unresolved
  • Appointments - Services create charges
  • Inventory - Products create charges
  • Memberships - Recurring charges
  • Insurance Verification - Insurance pays portions
  • Receipts - Proof of payment
For advanced payment processing, merchant accounts, or POS device setup, see Settings > Payment Management.